union_bedpe
Concepts
Section titled “Concepts”After building or extracting a bedpe file, union_bedpe can reduce granularity by combining regions with overlapping interactions.
Single .bedpe file input
Section titled “Single .bedpe file input”
Multiple .bedpe file input
Section titled “Multiple .bedpe file input”
Given one or more bedpe files, union_bedpe will print the union of intervals to standard out.
Multiple bedpe files can be supplied as -P bedpe1 -P bedpe2 -P bedpe3 etc.
Usage and Option Summary
union_bedpe -P /path/to/bedpe1Required
| Short Option | Long Option | Description |
|---|---|---|
-P |
--bedpe |
Path of the bedpe file you want to use |
Optional
| Short Option | Long Option | Description |
|---|---|---|
-h |
--help |
Help message |