union_bedpe

Concepts

After building or extracting a bedpe file, union_bedpe can reduce granularity by combining regions with overlapping interactions.

Single .bedpe file input

Multiple .bedpe file input

Usage

Given one or more bedpe files, union_bedpe will print the union of intervals to standard out. Multiple bedpe files can be supplied as -P bedpe1 -P bedpe2 -P bedpe3 etc.

Usage and Option Summary

union_bedpe -P /path/to/bedpe1

Required

Short Option	Long Option	Description
-P	--bedpe	Path of the bedpe file you want to use

Optional

Short Option	Long Option	Description
-h	--help	Help message