Tools

Each tool in the AQuA-suite is designed to handle a specific part of the 3D genomics analysis pipeline. Use the table below to explore available tools and the kinds of operations they perform.

To download AQuA-tools and get started, visit our GitHub repository.

Tools	Operations
build_bedpe	build
extract_bedpe	build
cluster_bedpe	build
query_bedpe	query
union_bedpe	merge
intersect_bedpe	filter
annotate_cluster	summarize
plot_APA	viz
plot_contacts	viz
plot_virtual_4C	viz