Tools
Each tool in the AQuA-suite is designed to handle a specific part of the 3D genomics analysis pipeline. Use the table below to explore available tools and the kinds of operations they perform.
To download AQuA-tools and get started, visit our GitHub repository.
| Tools | Operations |
|---|---|
| build_bedpe | build |
| extract_bedpe | build |
| cluster_bedpe | build |
| query_bedpe | query |
| union_bedpe | merge |
| intersect_bedpe | filter |
| annotate_cluster | summarize |
| plot_APA | viz |
| plot_contacts | viz |
| plot_virtual_4C | viz |